Version of circlator: 1.5.6-13
Architecture of circlator: all
| circlator | circlator | ||
|---|---|---|---|
| size | filename | hash functions | filename |
| 345.2 KB | ./usr/lib/python3/dist-packages/circlator/tests/data/assembly_test_circular_contigs_spades_post_3_6_1/assembly_graph.fastg./usr/lib/python3/dist-packages/circlator/tests/data/assembly_test_circular_contigs_from_spades_after_3_6_1.assembly_graph.fastg | sha512 | ./usr/lib/python3/dist-packages/circlator/tests/data/assembly_test_circular_contigs_from_spades_after_3_6_1.assembly_graph.fastg |
| sha512 | ./usr/lib/python3/dist-packages/circlator/tests/data/assembly_test_circular_contigs_spades_post_3_6_1/assembly_graph.fastg | ||
| 32.7 KB | ./usr/share/doc/circlator/examples/merge_test.py./usr/lib/python3/dist-packages/circlator/tests/merge_test.py | sha512 | ./usr/lib/python3/dist-packages/circlator/tests/merge_test.py |
| sha512 | ./usr/share/doc/circlator/examples/merge_test.py | ||
| 12.1 KB | ./usr/lib/python3/dist-packages/circlator/tests/start_fixer_test.py./usr/share/doc/circlator/examples/start_fixer_test.py | sha512 | ./usr/lib/python3/dist-packages/circlator/tests/start_fixer_test.py |
| sha512 | ./usr/share/doc/circlator/examples/start_fixer_test.py | ||
| 10.6 KB | ./usr/share/doc/circlator/examples/clean_test.py./usr/lib/python3/dist-packages/circlator/tests/clean_test.py | sha512 | ./usr/lib/python3/dist-packages/circlator/tests/clean_test.py |
| sha512 | ./usr/share/doc/circlator/examples/clean_test.py | ||
| 8.1 KB | ./usr/lib/python3/dist-packages/circlator/tests/bamfilter_test.py./usr/share/doc/circlator/examples/bamfilter_test.py | sha512 | ./usr/lib/python3/dist-packages/circlator/tests/bamfilter_test.py |
| sha512 | ./usr/share/doc/circlator/examples/bamfilter_test.py | ||
| 7.4 KB | ./usr/share/doc/circlator/examples/assembly_test.py./usr/lib/python3/dist-packages/circlator/tests/assembly_test.py | sha512 | ./usr/lib/python3/dist-packages/circlator/tests/assembly_test.py |
| sha512 | ./usr/share/doc/circlator/examples/assembly_test.py | ||
| 4.3 KB | ./usr/lib/python3/dist-packages/circlator/tests/dnaa_test.py./usr/share/doc/circlator/examples/dnaa_test.py | sha512 | ./usr/lib/python3/dist-packages/circlator/tests/dnaa_test.py |
| sha512 | ./usr/share/doc/circlator/examples/dnaa_test.py | ||
| 4.0 KB | ./usr/share/doc/circlator/examples/assemble_test.py./usr/lib/python3/dist-packages/circlator/tests/assemble_test.py | sha512 | ./usr/lib/python3/dist-packages/circlator/tests/assemble_test.py |
| sha512 | ./usr/share/doc/circlator/examples/assemble_test.py | ||
| 3.9 KB | ./usr/share/doc/circlator/examples/minimus2_test.py./usr/lib/python3/dist-packages/circlator/tests/minimus2_test.py | sha512 | ./usr/lib/python3/dist-packages/circlator/tests/minimus2_test.py |
| sha512 | ./usr/share/doc/circlator/examples/minimus2_test.py | ||
| 3.3 KB | ./usr/lib/python3/dist-packages/circlator/tests/mapping_test.py./usr/share/doc/circlator/examples/mapping_test.py | sha512 | ./usr/lib/python3/dist-packages/circlator/tests/mapping_test.py |
| sha512 | ./usr/share/doc/circlator/examples/mapping_test.py | ||
| 2.7 KB | ./usr/share/doc/circlator/examples/external_progs_test.py./usr/lib/python3/dist-packages/circlator/tests/external_progs_test.py | sha512 | ./usr/lib/python3/dist-packages/circlator/tests/external_progs_test.py |
| sha512 | ./usr/share/doc/circlator/examples/external_progs_test.py | ||
| 2.0 KB | ./usr/lib/python3/dist-packages/circlator/tests/data/merge_test_merge_bridged_contig_pair.test3.ref.fa./usr/lib/python3/dist-packages/circlator/tests/data/merge_test_merge_bridged_contig_pair.test4.ref.fa | sha512 | ./usr/lib/python3/dist-packages/circlator/tests/data/merge_test_merge_bridged_contig_pair.test3.ref.fa |
| sha512 | ./usr/lib/python3/dist-packages/circlator/tests/data/merge_test_merge_bridged_contig_pair.test4.ref.fa | ||
| 2.0 KB | ./usr/lib/python3/dist-packages/circlator/tests/data/merge_test_merge_bridged_contig_pair.test1.ref.fa./usr/lib/python3/dist-packages/circlator/tests/data/merge_test_merge_bridged_contig_pair.test2.ref.fa | sha512 | ./usr/lib/python3/dist-packages/circlator/tests/data/merge_test_merge_bridged_contig_pair.test1.ref.fa |
| sha512 | ./usr/lib/python3/dist-packages/circlator/tests/data/merge_test_merge_bridged_contig_pair.test2.ref.fa | ||
| 1.5 KB | ./usr/lib/python3/dist-packages/circlator/tests/data/minimus2_test_run_minimus2.in.fa./usr/lib/python3/dist-packages/circlator/tests/data/minimus2_test_run_minimus2_on_one_contig.fa | sha512 | ./usr/lib/python3/dist-packages/circlator/tests/data/minimus2_test_run_minimus2.in.fa |
| sha512 | ./usr/lib/python3/dist-packages/circlator/tests/data/minimus2_test_run_minimus2_on_one_contig.fa | ||
| 1.4 KB | ./usr/lib/python3/dist-packages/circlator/tests/data/start_fixer_run_bit_of_everything.ref.fa./usr/lib/python3/dist-packages/circlator/tests/data/start_fixer_run_none_for_prodigal.ref.fa | sha512 | ./usr/lib/python3/dist-packages/circlator/tests/data/start_fixer_run_bit_of_everything.ref.fa |
| sha512 | ./usr/lib/python3/dist-packages/circlator/tests/data/start_fixer_run_none_for_prodigal.ref.fa | ||
| 836 B | ./usr/lib/python3/dist-packages/circlator/tests/data/merge_test_hits_to_new_seq.2.ref.fa./usr/lib/python3/dist-packages/circlator/tests/data/merge_test_hits_to_new_seq.1.ref.fa | sha512 | ./usr/lib/python3/dist-packages/circlator/tests/data/merge_test_hits_to_new_seq.1.ref.fa |
| sha512 | ./usr/lib/python3/dist-packages/circlator/tests/data/merge_test_hits_to_new_seq.2.ref.fa | ||
| 835 B | ./usr/lib/python3/dist-packages/circlator/tests/data/assembly_test_circular_contigs_spades_post_3_6_1/contigs.paths./usr/lib/python3/dist-packages/circlator/tests/data/assembly_test_circular_contigs_from_spades_after_3_6_1.contigs.paths./usr/lib/python3/dist-packages/circlator/tests/data/assembly_test_spades_contigs_paths_to_dict.contigs.paths | sha512 | ./usr/lib/python3/dist-packages/circlator/tests/data/assembly_test_circular_contigs_from_spades_after_3_6_1.contigs.paths |
| sha512 | ./usr/lib/python3/dist-packages/circlator/tests/data/assembly_test_circular_contigs_spades_post_3_6_1/contigs.paths | ||
| sha512 | ./usr/lib/python3/dist-packages/circlator/tests/data/assembly_test_spades_contigs_paths_to_dict.contigs.paths | ||
| 828 B | ./usr/lib/python3/dist-packages/circlator/tests/data/merge_test_hits_to_new_seq.2.expected.fa./usr/lib/python3/dist-packages/circlator/tests/data/merge_test_hits_to_new_seq.1.expected.fa | sha512 | ./usr/lib/python3/dist-packages/circlator/tests/data/merge_test_hits_to_new_seq.1.expected.fa |
| sha512 | ./usr/lib/python3/dist-packages/circlator/tests/data/merge_test_hits_to_new_seq.2.expected.fa | ||
| 778 B | ./usr/lib/python3/dist-packages/circlator/tests/data/merge_test_nucmer_hits_to_potential_join.reassembly.fa./usr/lib/python3/dist-packages/circlator/tests/data/merge_test_merge_bridged_contig_pair.test1.reassembly.fa | sha512 | ./usr/lib/python3/dist-packages/circlator/tests/data/merge_test_merge_bridged_contig_pair.test1.reassembly.fa |
| sha512 | ./usr/lib/python3/dist-packages/circlator/tests/data/merge_test_nucmer_hits_to_potential_join.reassembly.fa | ||
| 545 B | ./usr/lib/python3/dist-packages/circlator/tests/common_test.py./usr/share/doc/circlator/examples/common_test.py | sha512 | ./usr/lib/python3/dist-packages/circlator/tests/common_test.py |
| sha512 | ./usr/share/doc/circlator/examples/common_test.py | ||
| 446 B | ./usr/lib/python3/dist-packages/circlator/tests/data/bamfilter_test_get_region_end.bam./usr/lib/python3/dist-packages/circlator/tests/data/bamfilter_test_check_contigs_to_use.bam | sha512 | ./usr/lib/python3/dist-packages/circlator/tests/data/bamfilter_test_check_contigs_to_use.bam |
| sha512 | ./usr/lib/python3/dist-packages/circlator/tests/data/bamfilter_test_get_region_end.bam | ||
| 376 B | ./usr/lib/python3/dist-packages/circlator/tests/data/bamfilter_test_all_reads_from_contig.bam./usr/lib/python3/dist-packages/circlator/tests/data/bamfilter_test_get_all_unmapped_reads.bam | sha512 | ./usr/lib/python3/dist-packages/circlator/tests/data/bamfilter_test_all_reads_from_contig.bam |
| sha512 | ./usr/lib/python3/dist-packages/circlator/tests/data/bamfilter_test_get_all_unmapped_reads.bam | ||
| 275 B | ./usr/lib/python3/dist-packages/circlator/tests/data/merge_test_get_spades_circular_nodes.fastg./usr/lib/python3/dist-packages/circlator/tests/data/assembly_test_circular_contigs_from_spades_before_3_6_1.fastg./usr/lib/python3/dist-packages/circlator/tests/data/assembly_test_circular_contigs_spades_pre_3_6_1/contigs.fastg | sha512 | ./usr/lib/python3/dist-packages/circlator/tests/data/assembly_test_circular_contigs_from_spades_before_3_6_1.fastg |
| sha512 | ./usr/lib/python3/dist-packages/circlator/tests/data/assembly_test_circular_contigs_spades_pre_3_6_1/contigs.fastg | ||
| sha512 | ./usr/lib/python3/dist-packages/circlator/tests/data/merge_test_get_spades_circular_nodes.fastg | ||
| 264 B | ./usr/lib/python3/dist-packages/circlator/tests/data/bamfilter_test_run_with_qual.bam.bai./usr/lib/python3/dist-packages/circlator/tests/data/bamfilter_test_run_no_qual.bam.bai | sha512 | ./usr/lib/python3/dist-packages/circlator/tests/data/bamfilter_test_run_no_qual.bam.bai |
| sha512 | ./usr/lib/python3/dist-packages/circlator/tests/data/bamfilter_test_run_with_qual.bam.bai | ||
| 176 B | ./usr/lib/python3/dist-packages/circlator/tests/data/bamfilter_test_check_contigs_to_use.bam.bai./usr/lib/python3/dist-packages/circlator/tests/data/bamfilter_test_get_region_end.bam.bai | sha512 | ./usr/lib/python3/dist-packages/circlator/tests/data/bamfilter_test_check_contigs_to_use.bam.bai |
| sha512 | ./usr/lib/python3/dist-packages/circlator/tests/data/bamfilter_test_get_region_end.bam.bai | ||
| 104 B | ./usr/lib/python3/dist-packages/circlator/tests/data/bamfilter_test_all_reads_from_contig.bam.bai./usr/lib/python3/dist-packages/circlator/tests/data/bamfilter_test_get_all_unmapped_reads.bam.bai | sha512 | ./usr/lib/python3/dist-packages/circlator/tests/data/bamfilter_test_all_reads_from_contig.bam.bai |
| sha512 | ./usr/lib/python3/dist-packages/circlator/tests/data/bamfilter_test_get_all_unmapped_reads.bam.bai | ||
| 28 B | ./usr/lib/python3/dist-packages/circlator/tests/data/assembly_test_get_contigs.fasta./usr/lib/python3/dist-packages/circlator/tests/data/start_fixer_init_contigs.fa | sha512 | ./usr/lib/python3/dist-packages/circlator/tests/data/assembly_test_get_contigs.fasta |
| sha512 | ./usr/lib/python3/dist-packages/circlator/tests/data/start_fixer_init_contigs.fa | ||
| 27 B | ./usr/lib/python3/dist-packages/circlator/tests/data/start_fixer_run_ignore_all.expect.fa./usr/lib/python3/dist-packages/circlator/tests/data/start_fixer_run_ignore_all.fa | sha512 | ./usr/lib/python3/dist-packages/circlator/tests/data/start_fixer_run_ignore_all.expect.fa |
| sha512 | ./usr/lib/python3/dist-packages/circlator/tests/data/start_fixer_run_ignore_all.fa | ||